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1

Structures and folding pathways of topologically knotted proteins

Virnau, Peter, Mallam, Anna, Jackson, Sophie

Journal:

Journal of Physics Condensed Matter

Année:

2011

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2011

2

GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model

Tobias Preis, Peter Virnau, Wolfgang Paul, Johannes J. Schneider

Journal:

Journal of Computational Physics

Année:

2009

Langue:

english

Fichier:

PDF, 571 KB

english, 2009

3

Beyond the Van Der Waals loop: What can be learned from simulating Lennard-Jones fluids inside the region of phase coexistence

Binder, Kurt, Block, Benjamin J., Virnau, Peter, Tröster, Andreas

Journal:

American Journal of Physics

Année:

2012

Langue:

english

Fichier:

PDF, 2.30 MB

english, 2012

4

Phase transitions and phase equilibria in spherical confinement

Winkler, Alexander, Statt, Antonia, Virnau, Peter, Binder, Kurt

Journal:

Physical Review E

Année:

2013

Langue:

english

Fichier:

PDF, 3.25 MB

english, 2013

5

Phase behavior of active Brownian disks, spheres, and dimers

Siebert, Jonathan Tammo, Letz, Janina, Speck, Thomas, Virnau, Peter

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 3.21 MB

english, 2017

6

Do the contact angle and line tension of surface-attached droplets depend on the radius of curvature?

Das, Subir K, Egorov, Sergei A, Virnau, Peter, Winter, David, Binder, Kurt

Journal:

Journal of Physics Condensed Matter

Année:

2018

Langue:

english

Fichier:

PDF, 2.75 MB

english, 2018

7

Conformational Properties of Polymer Mushrooms Under Spherical and Cylindrical Confinement

Rong Wang, Peter Virnau, Kurt Binder

Journal:

Macromolecular Theory and Simulations

Année:

2010

Langue:

english

Fichier:

PDF, 484 KB

english, 2010

8

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model

Benjamin Block, Peter Virnau, Tobias Preis

Journal:

Computer Physics Communications

Année:

2010

Langue:

english

Fichier:

PDF, 401 KB

english, 2010

9

Monte Carlo simulations of a single polystyrene chain in spherical confinement

Daniel Reith, Peter Virnau

Journal:

Computer Physics Communications

Année:

2011

Langue:

english

Fichier:

PDF, 234 KB

english, 2011

10

Detection and visualization of physical knots in macromolecules

Journal:

Physics Procedia

Année:

2010

Langue:

english

Fichier:

PDF, 460 KB

english, 2010

11

Monte Carlo Methods for Estimating Interfacial Free Energies and Line Tensions

Kurt Binder, Benjamin Block, Subir K. Das, Peter Virnau, David Winter

Journal:

Journal of Statistical Physics

Année:

2011

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2011

12

Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states

Daniel Reith, Peter Virnau

Journal:

Computer Physics Communications

Année:

2010

Langue:

english

Fichier:

PDF, 257 KB

english, 2010

13

Rounding of Phase Transitions in Cylindrical Pores

Wilms, Dorothea, Winkler, Alexander, Virnau, Peter, Binder, Kurt

Journal:

Physical Review Letters

Année:

2010

Langue:

english

Fichier:

PDF, 377 KB

english, 2010

14

Calculation of free energy through successive umbrella sampling

Virnau, Peter, Müller, Marcus

Journal:

The Journal of Chemical Physics

Année:

2004

Langue:

english

Fichier:

PDF, 332 KB

english, 2004

15

Monte Carlo Test of the Classical Theory for Heterogeneous Nucleation Barriers

Winter, David, Virnau, Peter, Binder, K.

Journal:

Physical Review Letters

Année:

2009

Langue:

english

Fichier:

PDF, 347 KB

english, 2009

16

Motion, relaxation dynamics, and diffusion processes in two-dimensional colloidal crystals confined between walls

Wilms, Dorothea, Virnau, Peter, Snook, Ian K., Binder, Kurt

Journal:

Physical Review E

Année:

2012

Langue:

english

Fichier:

PDF, 4.41 MB

english, 2012

17

Computer Simulation Studies of Chain Dynamics in Polymer Brushes

Reith, Daniel, Milchev, Andrey, Virnau, Peter, Binder, Kurt

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 4.08 MB

english, 2012

18

Curvature dependence of surface free energy of liquid drops and bubbles: A simulation study

Block, Benjamin J., Das, Subir K., Oettel, Martin, Virnau, Peter, Binder, Kurt

Journal:

The Journal of Chemical Physics

Année:

2010

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2010

19

Influence of chain stiffness on knottedness in single polymers

Virnau, Peter, Rieger, Florian C., Reith, Daniel

Journal:

Biochemical Society Transactions

Année:

2013

Langue:

english

Fichier:

PDF, 267 KB

english, 2013

20

Spinodal decomposition of polymer solutions: molecular dynamics simulations of the two-dimensional case

Reith, Daniel, Bucior, Katarzyna, Yelash, Leonid, Virnau, Peter, Binder, Kurt

Journal:

Journal of Physics Condensed Matter

Année:

2012

Langue:

english

Fichier:

PDF, 5.18 MB

english, 2012

21

The evaporation/condensation transition of liquid droplets

MacDowell, Luis G., Virnau, Peter, Müller, Marcus, Binder, Kurt

Journal:

The Journal of Chemical Physics

Année:

2004

Langue:

english

Fichier:

PDF, 590 KB

english, 2004

22

Simulation of vapor-liquid coexistence in finite volumes: A method to compute the surface free energy of droplets

Schrader, Manuel, Virnau, Peter, Binder, Kurt

Journal:

Physical Review E

Année:

2009

Langue:

english

Fichier:

PDF, 617 KB

english, 2009

23

Determination of the Origin and Magnitude of Logarithmic Finite-Size Effects on Interfacial Tension: Role of Interfacial Fluctuations and Domain Breathing

Schmitz, Fabian, Virnau, Peter, Binder, Kurt

Journal:

Physical Review Letters

Année:

2014

Langue:

english

Fichier:

PDF, 427 KB

english, 2014

24

Phase Behavior of Active Swimmers in Depletants: Molecular Dynamics and Integral Equation Theory

Das, Subir K., Egorov, Sergei A., Trefz, Benjamin, Virnau, Peter, Binder, Kurt

Journal:

Physical Review Letters

Année:

2014

Langue:

english

Fichier:

PDF, 841 KB

english, 2014

25

Monte Carlo tests of nucleation concepts in the lattice gas model

Schmitz, Fabian, Virnau, Peter, Binder, Kurt

Journal:

Physical Review E

Année:

2013

Langue:

english

Fichier:

PDF, 2.37 MB

english, 2013

26

Knots in Globule and Coil Phases of a Model Polyethylene

Virnau, Peter, Kantor, Yacov, Kardar, Mehran

Journal:

Journal of the American Chemical Society

Année:

2005

Langue:

english

Fichier:

PDF, 281 KB

english, 2005

27

Polymer Dynamics in a Polymer-Solid Interphase: Molecular Dynamics Simulations of 1,4-Polybutadiene At a Graphite Surface

Solar, Mathieu, Yelash, Leonid, Virnau, Peter, Binder, Kurt, Paul, Wolfgang

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 574 KB

english, 2014

28

Capturing knots in polymers

Virnau, Peter, Kardar, Mehran, Kantor, Yacov

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Année:

2005

Langue:

english

Fichier:

PDF, 478 KB

english, 2005

29

Erratum: Determination of the Origin and Magnitude of Logarithmic Finite-Size Effects on Interfacial Tension: Role of Interfacial Fluctuations and Domain Breathing [Phys. Rev. Lett. 112, 125701 (2014)]

Schmitz, Fabian, Virnau, Peter, Binder, Kurt

Journal:

Physical Review Letters

Année:

2014

Fichier:

PDF, 24 KB

2014

30

Perspective: The Asakura Oosawa model: A colloid prototype for bulk and interfacial phase behavior

Binder, Kurt, Virnau, Peter, Statt, Antonia

Journal:

The Journal of Chemical Physics

Année:

2014

Langue:

english

Fichier:

PDF, 1.63 MB

english, 2014

31

Logarithmic finite-size effects on interfacial free energies: Phenomenological theory and Monte Carlo studies

Schmitz, Fabian, Virnau, Peter, Binder, Kurt

Journal:

Physical Review E

Année:

2014

Langue:

english

Fichier:

PDF, 3.61 MB

english, 2014

32

Phase behavior of n-alkanes in supercritical solution: A Monte Carlo study

Virnau, Peter, Müller, Marcus, MacDowell, L. G., Binder, K.

Journal:

The Journal of Chemical Physics

Année:

2004

Langue:

english

Fichier:

PDF, 743 KB

english, 2004

33

Spinodal decomposition of polymer solutions: A parallelized molecular dynamics simulation

Yelash, Leonid, Virnau, Peter, Paul, Wolfgang, Binder, Kurt, Müller, Marcus

Journal:

Physical Review E

Année:

2008

Langue:

english

Fichier:

PDF, 572 KB

english, 2008

34

Sequence Determines Degree of Knottedness in a Coarse-Grained Protein Model

Wüst, Thomas, Reith, Daniel, Virnau, Peter

Journal:

Physical Review Letters

Année:

2015

Langue:

english

Fichier:

PDF, 702 KB

english, 2015

35

Finite-Size Effects on Liquid-Solid Phase Coexistence and the Estimation of Crystal Nucleation Barriers

Statt, Antonia, Virnau, Peter, Binder, Kurt

Journal:

Physical Review Letters

Année:

2015

Langue:

english

Fichier:

PDF, 697 KB

english, 2015

36

METHODS TO COMPUTE PRESSURE AND WALL TENSION IN FLUIDS CONTAINING HARD PARTICLES

DEB, DEBABRATA, WILMS, DOROTHEA, WINKLER, ALEXANDER, VIRNAU, PETER, BINDER, KURT

Journal:

International Journal of Modern Physics C

Année:

2012

Langue:

english

Fichier:

PDF, 262 KB

english, 2012

37

Anisotropic interfacial tension, contact angles, and line tensions: A graphics-processing-unit-based Monte Carlo study of the Ising model

Block, Benjamin J., Kim, Suam, Virnau, Peter, Binder, Kurt

Journal:

Physical Review E

Année:

2014

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2014

38

GPU Based Molecular Dynamics Simulations of Polymer Rings in Concentrated Solution: Structure and Scaling

Reith, Daniel, Mirny, Leonid, Virnau, Peter

Journal:

Progress of Theoretical Physics Supplement

Année:

2011

Langue:

english

Fichier:

PDF, 609 KB

english, 2011

39

Crystal nuclei in melts: a Monte Carlo simulation of a model for attractive colloids

Statt, Antonia, Virnau, Peter, Binder, Kurt

Journal:

Molecular Physics

Année:

2015

Langue:

english

Fichier:

PDF, 3.05 MB

english, 2015

40

Intricate Knots in Proteins: Function and Evolution

Virnau, Peter, Mirny, Leonid A., Kardar, Mehran

Journal:

PLoS Computational Biology

Année:

2006

Langue:

english

Fichier:

PDF, 324 KB

english, 2006

41

A Stevedore's Protein Knot

Bölinger, Daniel, Sułkowska, Joanna I., Hsu, Hsiao-Ping, Mirny, Leonid A., Kardar, Mehran, Onuchic, José N., Virnau, Peter, Taylor, William

Journal:

PLoS Computational Biology

Année:

2010

Langue:

english

Fichier:

PDF, 548 KB

english, 2010

42

Statics and dynamics of colloid-polymer mixtures near their critical point of phase separation: A computer simulation study of a continuous Asakura–Oosawa model

Zausch, Jochen, Virnau, Peter, Binder, Kurt, Horbach, Jürgen, Vink, Richard L.

Journal:

The Journal of Chemical Physics

Année:

2009

Langue:

english

Fichier:

PDF, 515 KB

english, 2009

43

Hydrodynamic mechanisms of spinodal decomposition in confined colloid-polymer mixtures: A multiparticle collision dynamics study

Winkler, Alexander, Virnau, Peter, Binder, Kurt, Winkler, Roland G., Gompper, Gerhard

Journal:

The Journal of Chemical Physics

Année:

2013

Langue:

english

Fichier:

PDF, 3.15 MB

english, 2013

44

Heterogeneous nucleation at a wall near a wetting transition: a Monte Carlo test of the classical theory

Winter, David, Virnau, Peter, Binder, Kurt

Journal:

Journal of Physics Condensed Matter

Année:

2009

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2009

45

Simulation of fluid-solid coexistence in finite volumes: A method to study the properties of wall-attached crystalline nuclei

Deb, Debabrata, Winkler, Alexander, Virnau, Peter, Binder, Kurt

Journal:

The Journal of Chemical Physics

Année:

2012

Langue:

english

Fichier:

PDF, 4.43 MB

english, 2012

46

The ensemble switch method for computing interfacial tensions

Schmitz, Fabian, Virnau, Peter

Journal:

The Journal of Chemical Physics

Année:

2015

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2015

47

Scaling behavior of topologically constrained polymer rings in a melt

Trefz, Benjamin, Virnau, Peter

Journal:

Journal of Physics Condensed Matter

Année:

2015

Langue:

english

Fichier:

PDF, 617 KB

english, 2015

48

The ensemble switch method and related approaches to obtain interfacial free energies between coexisting phases from simulations: a brief review

Virnau, Peter, Schmitz, Fabian, Binder, Kurt

Journal:

Molecular Simulation

Année:

2015

Langue:

english

Fichier:

PDF, 1001 KB

english, 2015

49

Confined binary two-dimensional colloidal crystals: Monte Carlo simulation of crack formation

Medina, Stefan, Virnau, Peter, Binder, Kurt

Journal:

Journal of Physics Condensed Matter

Année:

2011

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2011

50

Phase separation kinetics in compressible polymer solutions: computer simulation of the early stages

Virnau, Peter, Müller, Marcus, MacDowell, Luis González, Binder, Kurt

Journal:

New Journal of Physics

Année:

2004

Langue:

english

Fichier:

PDF, 825 KB

english, 2004